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Identifying the topology of protein complexes from affinity purification assays

Supplementary Material

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Supplementary Material PDF
Software (including ProCope library): ZIP TAR.GZ
README file README.txt
Predicted Networks and Subcomplexes ZIP TAR.GZ
Detailed results for the 21 largest complexes

Predicted scaffold networks for the 21 complexes with at least 10 subunits, at least 2 predicted subcomplexes and available subcomponent annotations

Results are provided without subcomponent annotation and with annotation. In the second case, proteins are colored by subcomponents.

ComplexNo subcomponent annotationColoring by subcomponents
DNA-directed RNA polymerase [HTML] [HTML]
SWI/SNF and RSC complex [HTML] [HTML]
INO80, SWR1 and NuA4 complex [HTML] [HTML]
SAGA, TFIID and ADA complex [HTML] [HTML]
Rpd3L and Rpd3s complex [HTML] [HTML]
Spliceosome [HTML] [HTML]
Vacuolar proton-transporting V-type ATPase [HTML] [HTML]
90S preribosome [HTML] [HTML]
t-UTP and Pwp2p-containing complexes (Preribosome) [HTML] [HTML]
Splicing factor complexes [HTML] [HTML]
Kinetochore complex [HTML] [HTML]
Proteasome regulatory particle [HTML] [HTML]
Mitochondrial large ribosomal subunit [HTML] [HTML]
Ribosome, small subunit [HTML] [HTML]
RNase MRP [HTML] [HTML]
Vesicle-mediated transport [HTML] [HTML]
Proteasome core complex [HTML] [HTML]
Preribosome, large subunit precursor [HTML] [HTML]
Preribosome, large subunit precursor (with attachments) [HTML] [HTML]
mRNA cleavage and polyadenylation specificity factor complex [HTML] [HTML]
DASH complex [HTML] [HTML]
Contact
If you have questions or suggestions, please contact Caroline Friedel.
References
2009
Papers
Caroline C. Friedel, Ralf Zimmer. Identifying the topology of protein complexes from affinity purification assays. Bioinformatics, vol 25, no. 16, pp. 2140-2146, August 2009.
2008
Papers
Caroline C. Friedel, Ralf Zimmer. Identifying the topology of protein complexes from affinity purification assays. Proceedings of the German Conference on Bioinformatics (GCB 2008), September 9-12, 2008, Dresden, Germany, Lecture Notes in Informatics, vol P-136, pp. 30-43, GI, 2008.


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