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Alternative Splicing Gallery

Detail view for swissprot protein AMY3E_ORYSA and isoform P27934-2

Template: 1bg9
Sequence Identity (Template - Swissprot): 0.7082294
Coverage of swissprot protein: 0.9176201

Alignment

AMY3E_ORYSA	MGKHHVTLCCVVFAVLCLASSLAQAQVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLDASKYGTEAELKSLIE
1bg9		-------------------------QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIG
SSE		-------------------------CCEEECCCCCHHHCCCCHHHHHHCCHHHHHHHCCCEEEECCCCCECCCCCCCECCCCCCCCCCCCCHHHHHHHHH
VARSPLIC	                                                                                                    

AMY3E_ORYSA	AFHDKNVECLADIVINHRCADYKDSRGVYCVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWLNWLRTDLGFDG
1bg9		ALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDG
SSE		HHHHCCCEEEEEECCCECCCCEECCCCCEEECCCCCCCCCCCCCHHHECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCE
VARSPLIC	                                                                                                    

AMY3E_ORYSA	WRLDFAKGYSAPLARIYVDNTNPTFVVGEIWSSLIYNGDGKPSTNQDADRQELVNWVEGVG--KPATAFDFTTKGILQAAVQGELWRLHDGNGKAPGLMG
1bg9		WRFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIG
SSE		EEECCHHHCCHHHHHHHHHHHCCCEEEECCCCCCCECCCCCECCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCHHHHCCCCCCCCCHHH
VARSPLIC	                       RRRRRRRRRRDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

AMY3E_ORYSA	WMPDQAVTFVDNHDTGSTQSLWPFPSDKVMQGYAYILTHPGIPCIFYDHVFDWNLQHEIATLAEIRSRNGIHAESTLDILKAEGDIYVAMIDGKVITKLG
1bg9		WWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLG
SSE		CCHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCEEEEEC
VARSPLIC	DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

AMY3E_ORYSA	PRYDAGGIIPSDFHVVAHGNDYCVWEKEGLRVPAGRKHY
1bg9		PRYDVGNLIPGGFKVAAHGNDYAVWEKI-----------
SSE		CCCCCHHHCCCCEEEEEEECCEEEEEEC-----------
VARSPLIC	DDDDDDDDDDDDDDDDDDDDDDDDDDDD

Varsplic events:
VSP_016023 REMOVE 234-437, affected aminoacids in template: 208-402 Color: Red
VSP_016022 REPLACE 224-233 TFVVGEIWSS => ASWGGCPIRP, affected aminoacids in template: 198-207 Color: Green

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